Our optimization software

We have been actively developing a C++ nonlinear optimization software suitable for data fitting problems. The software is called Unfit and is available on GitHub. You can

• Get Unfit by cloning the repository (git clone https://github.com/ComputationalBioLab/Unfit.git) or download the latest stable release in zip or tar.gz format
• Take a look at the software documentation
• Go through our basic tutorial or the more advanced one

Code associated with publications

Some of our publications are based on codes that we make available to the community. This section contains a list of codes available for download divided by the reference publication

• Code for our cell model of an interstitial cell of Cajal (ICC) (Corrias A & Buist ML. Quantitative cellular description of gastric slow wave activity. Am J Physiol Gastrointest Liver Physiol, 294(4):G989–G995, Apr 2008).
• Code for our gastric smooth muscle cell model (Corrias A & Buist ML. A quantitative model of gastric smooth muscle cellular activation. Ann Biomed Eng, 35(9):1595–1607, September 2007.)
• Code for our jejunal smooth muscle cell model (Poh YC, Corrias A, Cheng N and Buist ML. A Quantitative Model of Human Jejunal Smooth Muscle Cell Electrophysiology. PLoS ONE 7(8): e42385, August 2012.)