HodgkinHuxleyBetaN.hpp

// Unfit: Data fitting and optimization software
//
// Copyright (C) 2012- Dr Martin Buist & Dr Alberto Corrias
// Contacts: martin.buist _at_ nus.edu.sg; alberto _at_ nus.edu.sg
//
// See the 'Contributors' file for a list of those who have contributed
// to this work.
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program.  If not, see <http://www.gnu.org/licenses/>.
//
#ifndef UNFIT_EXAMPLES_HODGKINHUXLEYBETAN_HPP_
#define UNFIT_EXAMPLES_HODGKINHUXLEYBETAN_HPP_

#include <cmath>
#include <vector>
#include "GenericCostFunction.hpp"

namespace Unfit
{
namespace Examples
{
class HodgkinHuxleyBetaN : public GenericCostFunction
{
 public:
  HodgkinHuxleyBetaN(const std::vector<double> &vm,
      const std::vector<double> beta_n)
    : vm_ {vm},
      beta_n_ {beta_n}
  {}

  std::vector<double> operator()(const std::vector<double> &param)
  {
    auto residuals = beta_n_;
    for (unsigned i = 0; i < residuals.size(); ++i) {
      residuals[i] -= param[0] * exp(-vm_[i] / param[1]);
    }
    return residuals;
  }
 private:
  const std::vector<double> vm_;
  const std::vector<double> beta_n_;
};

}  // namespace Examples
}  // namespace Unfit

#endif